CDS

Accession Number TCMCG057C22437
gbkey CDS
Protein Id XP_018492047.1
Location complement(join(844050..844054,844156..844369,844458..844868,844960..845169,845266..845447,845527..845630,845724..846151,846245..846516,846593..846819,846931..847146,847259..847419,847505..847700,847789..847885,847980..848109,848193..848321,848405..848545,848653..848714,848791..848875,848971..849105,849324..849437,849641..849818,849898..849983))
Gene LOC108862422
GeneID 108862422
Organism Raphanus sativus

Protein

Length 1260aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA344915
db_source XM_018636545.1
Definition PREDICTED: endoribonuclease Dicer homolog 2 isoform X3 [Raphanus sativus]

EGGNOG-MAPPER Annotation

COG_category A
Description Belongs to the helicase family. Dicer subfamily
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03036        [VIEW IN KEGG]
KEGG_ko ko:K11592        [VIEW IN KEGG]
EC -
KEGG_Pathway ko05206        [VIEW IN KEGG]
map05206        [VIEW IN KEGG]
GOs GO:0002252        [VIEW IN EMBL-EBI]
GO:0002376        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003676        [VIEW IN EMBL-EBI]
GO:0003723        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0004518        [VIEW IN EMBL-EBI]
GO:0004519        [VIEW IN EMBL-EBI]
GO:0004521        [VIEW IN EMBL-EBI]
GO:0004525        [VIEW IN EMBL-EBI]
GO:0004540        [VIEW IN EMBL-EBI]
GO:0005488        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006396        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006952        [VIEW IN EMBL-EBI]
GO:0006955        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0009605        [VIEW IN EMBL-EBI]
GO:0009607        [VIEW IN EMBL-EBI]
GO:0009615        [VIEW IN EMBL-EBI]
GO:0009616        [VIEW IN EMBL-EBI]
GO:0009892        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0010033        [VIEW IN EMBL-EBI]
GO:0010216        [VIEW IN EMBL-EBI]
GO:0010267        [VIEW IN EMBL-EBI]
GO:0010467        [VIEW IN EMBL-EBI]
GO:0010468        [VIEW IN EMBL-EBI]
GO:0010605        [VIEW IN EMBL-EBI]
GO:0010608        [VIEW IN EMBL-EBI]
GO:0010629        [VIEW IN EMBL-EBI]
GO:0014070        [VIEW IN EMBL-EBI]
GO:0016070        [VIEW IN EMBL-EBI]
GO:0016246        [VIEW IN EMBL-EBI]
GO:0016441        [VIEW IN EMBL-EBI]
GO:0016442        [VIEW IN EMBL-EBI]
GO:0016458        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016788        [VIEW IN EMBL-EBI]
GO:0016891        [VIEW IN EMBL-EBI]
GO:0016893        [VIEW IN EMBL-EBI]
GO:0019222        [VIEW IN EMBL-EBI]
GO:0030422        [VIEW IN EMBL-EBI]
GO:0031047        [VIEW IN EMBL-EBI]
GO:0031050        [VIEW IN EMBL-EBI]
GO:0031332        [VIEW IN EMBL-EBI]
GO:0032296        [VIEW IN EMBL-EBI]
GO:0032991        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0035194        [VIEW IN EMBL-EBI]
GO:0035821        [VIEW IN EMBL-EBI]
GO:0040029        [VIEW IN EMBL-EBI]
GO:0042221        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043207        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043331        [VIEW IN EMBL-EBI]
GO:0044003        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044403        [VIEW IN EMBL-EBI]
GO:0044419        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0045087        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0048519        [VIEW IN EMBL-EBI]
GO:0050789        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051214        [VIEW IN EMBL-EBI]
GO:0051607        [VIEW IN EMBL-EBI]
GO:0051701        [VIEW IN EMBL-EBI]
GO:0051704        [VIEW IN EMBL-EBI]
GO:0051707        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0051817        [VIEW IN EMBL-EBI]
GO:0052018        [VIEW IN EMBL-EBI]
GO:0052249        [VIEW IN EMBL-EBI]
GO:0060255        [VIEW IN EMBL-EBI]
GO:0065007        [VIEW IN EMBL-EBI]
GO:0070887        [VIEW IN EMBL-EBI]
GO:0070918        [VIEW IN EMBL-EBI]
GO:0071310        [VIEW IN EMBL-EBI]
GO:0071359        [VIEW IN EMBL-EBI]
GO:0071407        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0090501        [VIEW IN EMBL-EBI]
GO:0090502        [VIEW IN EMBL-EBI]
GO:0097159        [VIEW IN EMBL-EBI]
GO:0098542        [VIEW IN EMBL-EBI]
GO:0098586        [VIEW IN EMBL-EBI]
GO:0140098        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901363        [VIEW IN EMBL-EBI]
GO:1901698        [VIEW IN EMBL-EBI]
GO:1901699        [VIEW IN EMBL-EBI]
GO:1990904        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGATGATGATGATGTGTACTGATGATATGGAGACTGATATCGCCGATCAAGTCTCTGCTTCTTCTCCTCTACCATTCGCGAGAAGTTATCAAGTGGAGGCGCTTGAGAAAGCAATGAAGCAGAACACGATTGTTTACTTGGAGACTGGTTCTGGCAAGACTCTTATTGCTATTATGCTTCTCCGTAGCTATGCTTACCTTTTCCGCAAGCCTTCTCCTTGCTTCACCGTCTTCTTGGTTCCTCAAGTTGTTCTTGTCACTCAACAAGCTGAAGCGCTGAAGAGGCATACGGATCTGAAAGTGGGCGTGTATTGGGGATCCATGGGGGTTGACTATTGGGATGCTTCTACATGGAAACAAGAAGTCGATAAATATGAGGTTCTTGTGATGACACCTGCCATTTTGCTCAATGCATTAAGACATAGTTTTCTGACGTTGAACATGATCAAGGTTCTAATATTTGATGAATGTCATCATGCTCGGGGTAATCACGCGTACGCTTGTATCTTGAAGGAGTTCTATCATAAGGAGTTAAATTCTGCAACTTCATTCGTTCCTCGAATATTTGGGATGACTGCATCCCCTGTGAAAACAAAGGGTGAAAACTTGGATAGCTACTGGAAAAAGATCAGTGAACTCGAAACTCTAATGAATTCAAAGGTGTACACATGTGAAAGTGAGTCGGTGCTGGCTCGTTTTGTCCCCTTTTCTACTCCGAGTTTCAAGTACTACCAGCACATGGGAATACCAAGCTCTAAACGCGCAGGCTTGGTAGCGGAACTTGAAAAGCTAGCCACAGAGCATCTCTTAGCCCTTGAAACACTGGATCTCAAGTCATCCACTGTTAATTCTATAAAGAAGAGACTGTCAAAGATATGTTCATCTATAACTTATTGTTTGGATGAACTTGGAATTTTTATGGCGCAGAAGGCTGCTCAGTTATTCTCAACCAGTCAGAACGACTTTGTCTTGTGGGGTCAACTAGAGAAGTTTAGCGAAACCTCTATAAAAAAATTCTGTAGTACTGCTTCACAGACCATTTTAGCTTACATACCTGATGGTCCTACCTGGAGTGTTGCTAACATAAAAAGAAATGTGGAGGCAGGTCTCATAACGTCGAAAATAGTCTGCCTTGTTGAATCTCTTCTTGATTATAGCTCCTTGGAGAAAATACGGTGCATCATATTTGTGCAAAGGGTGATAGCAGCTATGGTTTTGGAATCCTTTTTGAATGAAATTCTTCCAACCTATAATAGCTGGAAAACTGAGTACGTTGCAGGAAATAACTCTGGCCTGCAAAGTCAATCCCGGAAGAAGCAGTTTGAAACTGTGGAGGACTTCCGAAAAGGCTTGGTGAACATCATCGTCTCAACATCTATTCTAGAGGAAGGTCTAGATGTTCAAAGTTGCAATCTGGTTGTCGGATTTGACCCTGCATCCAACATTTGCAGTTTCATACAATCTCAAGGGCGTGCTAGAATGCCTAACTCAGATTATCTGATGATGGTGAAAAGCGGAGATATGCCCACACAATCTCGGTTGATGAAATATATTTCTGGTGGGAAAAGAATGCGTGAAGATTCTTTGAGTCATTCTCATGTTCCCTGTCAACCTCTTCCAAATGATTCATCCGAGGATTTCTTCCGCGTCAACAGCACAGGAGCAATTGTTACTCTTAGATCAAGCGTCAGCTTAATATATTTCTACTGCTCAAGGCTTCCTTCAGATGAATACTTCAAACCAGCTCCTAGATTTGATATAGACGAGGATCGGGGGATTTGCACCCTTTACCTTCCCAAGAGCTGTCAAGTCAAAGAAGTTAGAGTCCAAGCAAATAAAAGTGTGTTAAAACAATCTGCATGTCTTGAAGCTTGCATTCAGCTGCACCAAGCTGGTGCTCTCACTAATCATCTTGTCCCTGACATGGTTTTGAAGGAAACTGTCCAACAAAAACTAGGGAAAATCCATTACGACCCTGAACAGCCAAGTTACTTTCCTCCAGAGCTAGTCTCCCAGTTTTCAGCACTGCCGCAGACAACATACCACTTCTACTCAATAAGGATGAAGTCAGAATTTCCAAGAAGTCTTCATTTTAACGATATTTTACTGGGCACGAGGGTTGAGCTCGAAGCTGACATTGGGAACACATGCTTCCGCTTAGAAGATCATCTTGGCTCAATAGCTGTGAGACTGAGTTATGTGGGATCGTTTGACCTTACACAAGATGAGGTCCTCTTGTGTAGAAGGTTTCAGATAACTCTTTTCAGAGTTCTTTTGGATCATAGTGTGGAAAATTTGATGGCGGCGTTGGATGGGTTGCATCTCAGAGACGGTGTAGCACTTGATTATCTACTAGTTCCATCCACTCATGAGCAAAAAGCATCTCTCATTGATTGGGAGGTGATAAGATCCGTGAACTTAACGAGTCATAAACCTTGGGAAAGGCATGCGGATTGTTCTGCCAAGGATGCTTCTTGCATTCTACACACAAAAGAGGGGTTGTTTTGCACCTGTGTCTTACAGAATGCTTTGGTTTACACACCACATAATGGATACGTCTACTGCACCAGAGGTATTCTCAGCAATTTAAACGCAAATTCGATATTGACGAGGAGAAAGTCTGGCGATGAGTCCTACATGGAGTACTATGAGAAAAGGCATGAGATTCGTTTAAATTTTGTGGATGAACCTTTTTTGAACGGGAGACACATTTTCACGCTGCATAATCACCTTCACATGACCAGGAAGAAAAAGGAGAAAGAGCATGACAGAGAGTTCGTTGAACTACCTCCTGAGCTATGTCATGTCATATTGTCTCCAATATCAGTGGATATGATCTATTCCTATAAATTCATGCCATCTGTTATGCAACGGATTGAATCTTTGCTTATAGCATTCAACCTTAAAAAGAACATCCCAAAAGTCTATATTCCAACCATCAAGGTTCTGGAAGCTATCACAACGAAGAAGTGCCAAGATCAGTTCCACTTGGAATCACTAGAAACACTTGGTGATTCTTTTCTGAAATATGCTGTTTGTCAGCATCTATTCCAAAGTTATCATAGTCATCACGAGGGTCTTCTCAGCACGATAAAAGATGGAATGATTTCGAATGTCACGCTCTGCAAATTTGGATGTAACCAGAAACTTCAGGGATTTATTCGAAATGAGTGTTTTGAACCTAAAGGGTGGATGGTTCCTGGTCAATCATCTGCAGCTTATGCTCTTGTTAATGATTATCTATCCGAATCTGGAAACATGTACATTGCTAAGAGGAGGAATTTGAAACGCAAGACTGTGGCTGATGTCGTAGAATCACTTATTGGTGCGTATCTTAGCGAAGGAGGTGAACTAGCAGCGTTAGCGTTCATGAACTGGGTCGGTATAAAAGTCGATTTCACAACTACGGTGATCCACAGAGAGCCATCAATACAAGCTGAGAAGCTTGTGAATGTAAGCTACATGGAGTCTCTTTTGAACTATAAATTCAAGGATAAGTCTCTTCTAGTCGAGGCATTGACTCATGGCTCGTACATGATTCCTGAAATTCCAAGATGCTATCAGCGGTTGGAGTTTCTCGGCGACTCTGTGTTGGATTATCTTATAACGAAGCACTTGTACGGCGAATATCCTAATCTTTCTCCTGGACTACTAACCGACATGCGCTCTGCTTCTGTGAACAATGAATGTTATGCTCAAGTAGCGGTGAAATCAAACCTGCACAAACACGTTCTCCATGCCTCTCATGATCTCCACAAGCACATCTCCAGAACAGTCGTCTGA
Protein:  
MMMMMCTDDMETDIADQVSASSPLPFARSYQVEALEKAMKQNTIVYLETGSGKTLIAIMLLRSYAYLFRKPSPCFTVFLVPQVVLVTQQAEALKRHTDLKVGVYWGSMGVDYWDASTWKQEVDKYEVLVMTPAILLNALRHSFLTLNMIKVLIFDECHHARGNHAYACILKEFYHKELNSATSFVPRIFGMTASPVKTKGENLDSYWKKISELETLMNSKVYTCESESVLARFVPFSTPSFKYYQHMGIPSSKRAGLVAELEKLATEHLLALETLDLKSSTVNSIKKRLSKICSSITYCLDELGIFMAQKAAQLFSTSQNDFVLWGQLEKFSETSIKKFCSTASQTILAYIPDGPTWSVANIKRNVEAGLITSKIVCLVESLLDYSSLEKIRCIIFVQRVIAAMVLESFLNEILPTYNSWKTEYVAGNNSGLQSQSRKKQFETVEDFRKGLVNIIVSTSILEEGLDVQSCNLVVGFDPASNICSFIQSQGRARMPNSDYLMMVKSGDMPTQSRLMKYISGGKRMREDSLSHSHVPCQPLPNDSSEDFFRVNSTGAIVTLRSSVSLIYFYCSRLPSDEYFKPAPRFDIDEDRGICTLYLPKSCQVKEVRVQANKSVLKQSACLEACIQLHQAGALTNHLVPDMVLKETVQQKLGKIHYDPEQPSYFPPELVSQFSALPQTTYHFYSIRMKSEFPRSLHFNDILLGTRVELEADIGNTCFRLEDHLGSIAVRLSYVGSFDLTQDEVLLCRRFQITLFRVLLDHSVENLMAALDGLHLRDGVALDYLLVPSTHEQKASLIDWEVIRSVNLTSHKPWERHADCSAKDASCILHTKEGLFCTCVLQNALVYTPHNGYVYCTRGILSNLNANSILTRRKSGDESYMEYYEKRHEIRLNFVDEPFLNGRHIFTLHNHLHMTRKKKEKEHDREFVELPPELCHVILSPISVDMIYSYKFMPSVMQRIESLLIAFNLKKNIPKVYIPTIKVLEAITTKKCQDQFHLESLETLGDSFLKYAVCQHLFQSYHSHHEGLLSTIKDGMISNVTLCKFGCNQKLQGFIRNECFEPKGWMVPGQSSAAYALVNDYLSESGNMYIAKRRNLKRKTVADVVESLIGAYLSEGGELAALAFMNWVGIKVDFTTTVIHREPSIQAEKLVNVSYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGDSVLDYLITKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHISRTVV